#NEXUS Begin trees; [Treefile saved Tuesday, January 18, 2005 10:58 AM] [! >Data file = SM_Combo 11.nex >Heuristic search settings: > Optimality criterion = parsimony > Character-status summary: > 532 characters are excluded > Of the remaining 650 included characters: > All characters are of type 'unord' > All characters have equal weight > 320 characters are constant > 55 variable characters are parsimony-uninformative > Number of (included) parsimony-informative characters = 275 > Gaps are treated as "missing" > Multistate taxa interpreted as uncertainty > Starting tree(s) obtained via stepwise addition > Addition sequence: random > Number of replicates = 100 > Starting seed = 690148420 > Number of trees held at each step during stepwise addition = 1 > Branch-swapping algorithm: tree-bisection-reconnection (TBR) > Steepest descent option not in effect > Initial 'MaxTrees' setting = 5000 (will be auto-increased by 100) > Branches collapsed (creating polytomies) if maximum branch length is zero > 'MulTrees' option in effect > Topological constraints not enforced > Trees are unrooted > >Heuristic search completed > Total number of rearrangements tried = 20367929 > Score of best tree(s) found = 2137 > Number of trees retained = 27 > Time used = 00:01:03.9 ] Translate 1 Neotrigonia, 2 Mut_rostrata, 3 Mut_dubia, 4 Ano_trigonus, 5 Ano_guanarensis, 6 Mon_minuana, 7 Eth_elliptica, 8 Aco_rivoli, 9 Hyr_depressa, 10 Hyr_australis, 11 Hyr_menziesi_1, 12 Hyr_menziesi_2, 13 Vel_angasi, 14 Vel_ambiguus, 15 Lor_rugata, 16 Dipl_chilensis, 17 Dipl_deceptus, 18 Castalia, 19 Mar_margaritifera, 20 Cum_monodonta, 21 Con_contradens, 22 Gon_angulata, 23 Trit_verrucosa, 24 Qua_quadrula, 25 Amb_plicata, 26 Ell_dilatata, 27 Ple_coccineum, 28 Fus_flava, 29 Tru_truncata, 30 Act_carinata, 31 Ptycho_fasciolaris, 32 Vill_iris, 33 Lig_recta, 34 Lamp_cardium, 35 Epi_triquetra, 36 Las_compressa, 37 Str_undulatus, 38 Pyg_grandis, 39 Ala_marginata, 40 Unio_pictorum, 41 Caf_caffra ; tree PAUP_1 = [&U] (1,(((((((((2,3),(((4,5),6),8)),7),((19,20),(((21,22),((36,((37,38),39)),(40,41))),((((23,24),(26,(27,28))),(29,((((30,34),35),32),(31,33)))),25)))),((11,12),((13,15),14))),9),10),(16,17)),18)); tree PAUP_2 = [&U] (1,(((((((((2,3),(((4,5),6),8)),7),((19,20),(((21,22),(((((23,24),(26,(27,28))),25),((((30,34),35),32),(31,33))),29)),((36,((37,38),39)),(40,41))))),((11,12),((13,15),14))),9),10),(16,17)),18)); tree PAUP_3 = [&U] (1,(((((((((2,3),(((4,5),6),8)),7),((19,20),(((21,22),((36,((37,38),39)),(40,41))),((((23,24),(26,(27,28))),((29,(((30,34),32),35)),(31,33))),25)))),((11,12),((13,15),14))),9),10),(16,17)),18)); tree PAUP_4 = [&U] (1,(((((((((2,3),(((4,5),6),8)),7),((19,20),(((21,22),((36,((37,38),39)),(40,41))),((((23,24),(26,(27,28))),(29,((((30,34),32),35),(31,33)))),25)))),((11,12),((13,15),14))),9),10),(16,17)),18)); tree PAUP_5 = [&U] (1,(((((((((2,3),(((4,5),6),8)),7),((19,20),(((21,22),(((((23,24),(26,(27,28))),25),((((30,34),35),32),(31,33))),29)),(((36,39),(37,38)),(40,41))))),((11,12),((13,15),14))),9),10),(16,17)),18)); tree PAUP_6 = [&U] (1,(((((((((2,3),(((4,5),6),8)),7),((19,20),(((21,22),(((((23,24),(26,(27,28))),25),(((30,34),(32,35)),(31,33))),29)),((36,((37,38),39)),(40,41))))),((11,12),((13,15),14))),9),10),(16,17)),18)); tree PAUP_7 = [&U] (1,(((((((((2,3),(((4,5),6),8)),7),((19,20),(((21,22),(((((23,24),(26,(27,28))),25),((((30,34),32),35),(31,33))),29)),((36,((37,38),39)),(40,41))))),((11,12),((13,15),14))),9),10),(16,17)),18)); tree PAUP_8 = [&U] (1,(((((((((2,3),((4,5),6)),(7,8)),((19,20),(((21,22),(((((23,24),(26,(27,28))),25),((((30,34),35),32),(31,33))),29)),((36,((37,38),39)),(40,41))))),((11,12),((13,15),14))),9),10),(16,17)),18)); tree PAUP_9 = [&U] (1,((((((((((2,3),((4,5),6)),8),7),((19,20),(((21,22),(((((23,24),(26,(27,28))),25),((((30,34),35),32),(31,33))),29)),((36,((37,38),39)),(40,41))))),((11,12),((13,15),14))),9),10),(16,17)),18)); tree PAUP_10 = [&U] (1,(((((((((2,3),((4,5),6)),(7,8)),((19,20),(((21,22),(((((23,24),(26,(27,28))),25),((((30,34),35),32),(31,33))),29)),(((36,39),(37,38)),(40,41))))),((11,12),((13,15),14))),9),10),(16,17)),18)); tree PAUP_11 = [&U] (1,((((((((((2,3),((4,5),6)),8),7),((19,20),(((21,22),(((((23,24),(26,(27,28))),25),((((30,34),35),32),(31,33))),29)),(((36,39),(37,38)),(40,41))))),((11,12),((13,15),14))),9),10),(16,17)),18)); tree PAUP_12 = [&U] (1,(((((((((2,3),(((4,5),6),8)),7),((19,20),(((21,22),(((((23,24),(26,(27,28))),25),(((30,34),(32,35)),(31,33))),29)),(((36,39),(37,38)),(40,41))))),((11,12),((13,15),14))),9),10),(16,17)),18)); tree PAUP_13 = [&U] (1,(((((((((2,3),(((4,5),6),8)),7),((19,20),(((21,22),(((((23,24),(26,(27,28))),25),((((30,34),32),35),(31,33))),29)),(((36,39),(37,38)),(40,41))))),((11,12),((13,15),14))),9),10),(16,17)),18)); tree PAUP_14 = [&U] (1,(((((((((2,3),((4,5),6)),(7,8)),((19,20),(((21,22),(((((23,24),(26,(27,28))),25),(((30,34),(32,35)),(31,33))),29)),((36,((37,38),39)),(40,41))))),((11,12),((13,15),14))),9),10),(16,17)),18)); tree PAUP_15 = [&U] (1,((((((((((2,3),((4,5),6)),8),7),((19,20),(((21,22),(((((23,24),(26,(27,28))),25),(((30,34),(32,35)),(31,33))),29)),((36,((37,38),39)),(40,41))))),((11,12),((13,15),14))),9),10),(16,17)),18)); tree PAUP_16 = [&U] (1,(((((((((2,3),((4,5),6)),(7,8)),((19,20),(((21,22),(((((23,24),(26,(27,28))),25),((((30,34),32),35),(31,33))),29)),((36,((37,38),39)),(40,41))))),((11,12),((13,15),14))),9),10),(16,17)),18)); tree PAUP_17 = [&U] (1,((((((((((2,3),((4,5),6)),8),7),((19,20),(((21,22),(((((23,24),(26,(27,28))),25),((((30,34),32),35),(31,33))),29)),((36,((37,38),39)),(40,41))))),((11,12),((13,15),14))),9),10),(16,17)),18)); tree PAUP_18 = [&U] (1,((((((((((2,3),((4,5),6)),8),7),((19,20),(((21,22),((36,((37,38),39)),(40,41))),(((((23,24),(26,(27,28))),25),((((30,34),35),32),(31,33))),29)))),((11,12),((13,15),14))),9),10),(16,17)),18)); tree PAUP_19 = [&U] (1,(((((((((2,3),((4,5),6)),(7,8)),((19,20),(((21,22),(((((23,24),(26,(27,28))),25),(((30,34),(32,35)),(31,33))),29)),(((36,39),(37,38)),(40,41))))),((11,12),((13,15),14))),9),10),(16,17)),18)); tree PAUP_20 = [&U] (1,(((((((((2,3),((4,5),6)),(7,8)),((19,20),(((21,22),(((((23,24),(26,(27,28))),25),((((30,34),32),35),(31,33))),29)),(((36,39),(37,38)),(40,41))))),((11,12),((13,15),14))),9),10),(16,17)),18)); tree PAUP_21 = [&U] (1,((((((((((2,3),((4,5),6)),8),7),((19,20),(((21,22),(((((23,24),(26,(27,28))),25),(((30,34),(32,35)),(31,33))),29)),(((36,39),(37,38)),(40,41))))),((11,12),((13,15),14))),9),10),(16,17)),18)); tree PAUP_22 = [&U] (1,((((((((((2,3),((4,5),6)),8),7),((19,20),(((21,22),(((((23,24),(26,(27,28))),25),((((30,34),32),35),(31,33))),29)),(((36,39),(37,38)),(40,41))))),((11,12),((13,15),14))),9),10),(16,17)),18)); tree PAUP_23 = [&U] (1,((((((((((2,3),((4,5),6)),8),7),((19,20),(((21,22),((36,((37,38),39)),(40,41))),(((((23,24),(26,(27,28))),25),(((30,34),(32,35)),(31,33))),29)))),((11,12),((13,15),14))),9),10),(16,17)),18)); tree PAUP_24 = [&U] (1,((((((((((2,3),((4,5),6)),8),7),((19,20),(((21,22),((36,((37,38),39)),(40,41))),(((((23,24),(26,(27,28))),25),((((30,34),32),35),(31,33))),29)))),((11,12),((13,15),14))),9),10),(16,17)),18)); tree PAUP_25 = [&U] (1,((((((((((2,3),((4,5),6)),8),7),((19,20),(((21,22),((36,((37,38),39)),(40,41))),((((((23,24),(26,(27,28))),25),((30,34),(32,35))),(31,33)),29)))),((11,12),((13,15),14))),9),10),(16,17)),18)); tree PAUP_26 = [&U] (1,((((((((((2,3),((4,5),6)),8),7),((19,20),(((21,22),((36,((37,38),39)),(40,41))),(((((23,24),(26,(27,28))),25),(31,33)),(29,(((30,34),32),35)))))),((11,12),((13,15),14))),9),10),(16,17)),18)); tree PAUP_27 = [&U] (1,(((((((((2,3),(((4,5),6),8)),7),((19,20),(((21,22),((36,((37,38),39)),(40,41))),((23,24),(25,((26,(27,28)),((29,31),((((30,34),35),32),33)))))))),((11,12),((13,15),14))),9),10),(16,17)),18)); End;