#NEXUS Begin trees; [Treefile saved Wednesday, January 26, 2005 3:31 PM] [! >Data file = SM_Combo 12.nex >Heuristic search settings: > Optimality criterion = parsimony > Character-status summary: > 59 characters are excluded > Of the remaining 1123 included characters: > All characters are of type 'unord' > All characters have equal weight > 521 characters are constant > 165 variable characters are parsimony-uninformative > Number of (included) parsimony-informative characters = 437 > Gaps are treated as "missing" > Multistate taxa interpreted as uncertainty > Branch-swapping algorithm: tree-bisection-reconnection (TBR) > Initial swapping on 15 trees already in memory > Steepest descent option not in effect > Initial 'MaxTrees' setting = 2800 (will be auto-increased by 100) > Branches collapsed (creating polytomies) if maximum branch length is zero > 'MulTrees' option in effect > Topological constraints not enforced > Trees are unrooted > >Heuristic search completed > Total number of rearrangements tried = 448234 > Score of best tree(s) found = 2869 > Number of trees retained = 15 > Time used = 0.77 sec ] Translate 1 Mytilus, 2 Astarte, 3 Neotrigonia, 4 Mut_rostrata, 5 Mut_dubia, 6 Ano_trigonus, 7 Ano_guanarensis, 8 Mon_minuana, 9 Eth_elliptica, 10 Aco_rivoli, 11 Pse_dalyi, 12 Hyr_depressa, 13 Hyr_australis, 14 Hyr_menziesi_1, 15 Hyr_menziesi_2, 16 Vel_angasi, 17 Vel_ambiguus, 18 Lor_rugata, 19 Dipl_chilensis, 20 Dipl_deceptus, 21 Castalia, 22 Mar_margaritifera, 23 Cum_monodonta, 24 Coel_aegyptiaca, 25 Pilsbry_exilis, 26 Pse_vondembusch, 27 Con_contradens, 28 Gon_angulata, 29 Trit_verrucosa, 30 Qua_quadrula, 31 Amb_plicata, 32 Ell_dilatata, 33 Ple_coccineum, 34 Fus_flava, 35 Obl_reflexa, 36 Tru_truncata, 37 Act_carinata, 38 Ptycho_fasciolaris, 39 Vill_iris, 40 Lig_recta, 41 Lamp_cardium, 42 Epi_triquetra, 43 Las_compressa, 44 Str_undulatus, 45 Pyg_grandis, 46 Ala_marginata, 47 Unio_pictorum, 48 Caf_caffra ; tree PAUP_1 = [&U] (1,(2,((3,((((((4,5),((6,7),8)),(9,10)),(((12,(13,((19,20),21))),(14,15)),((16,18),17))),(22,23)),((((11,(47,48)),(43,((44,45),46))),(27,(28,((((29,30),35),(31,(32,(33,34)))),(36,(((37,41),(39,42)),(38,40))))))),(25,26)))),24))); tree PAUP_2 = [&U] (1,(2,(3,(((((((4,5),((6,7),8)),(9,10)),(((12,(13,((19,20),21))),(14,15)),((16,18),17))),(22,23)),((((11,(47,48)),(43,((44,45),46))),(27,(28,((((29,30),35),(31,(32,(33,34)))),(36,(((37,41),(39,42)),(38,40))))))),(25,26))),24)))); tree PAUP_3 = [&U] (1,(2,((3,24),((((((4,5),((6,7),8)),(9,10)),(((12,(13,((19,20),21))),(14,15)),((16,18),17))),(22,23)),((((11,(47,48)),(43,((44,45),46))),(27,(28,((((29,30),35),(31,(32,(33,34)))),(36,(((37,41),(39,42)),(38,40))))))),(25,26)))))); tree PAUP_4 = [&U] (1,((2,(3,((((((4,5),((6,7),8)),(9,10)),(((12,(13,((19,20),21))),(14,15)),((16,18),17))),(22,23)),((((11,(47,48)),(43,((44,45),46))),(27,(28,((((29,30),35),(31,(32,(33,34)))),(36,(((37,41),(39,42)),(38,40))))))),(25,26))))),24)); tree PAUP_5 = [&U] (1,((2,24),(3,((((((4,5),((6,7),8)),(9,10)),(((12,(13,((19,20),21))),(14,15)),((16,18),17))),(22,23)),((((11,(47,48)),(43,((44,45),46))),(27,(28,((((29,30),35),(31,(32,(33,34)))),(36,(((37,41),(39,42)),(38,40))))))),(25,26)))))); tree PAUP_6 = [&U] (1,(2,((3,((((((4,5),((6,7),8)),(9,10)),(((12,(13,((19,20),21))),(14,15)),((16,18),17))),(22,23)),((((11,(47,48)),((43,46),(44,45))),(27,(28,((((29,30),35),(31,(32,(33,34)))),(36,(((37,41),(39,42)),(38,40))))))),(25,26)))),24))); tree PAUP_7 = [&U] (1,(2,(3,(((((((4,5),((6,7),8)),(9,10)),(((12,(13,((19,20),21))),(14,15)),((16,18),17))),(22,23)),((((11,(47,48)),((43,46),(44,45))),(27,(28,((((29,30),35),(31,(32,(33,34)))),(36,(((37,41),(39,42)),(38,40))))))),(25,26))),24)))); tree PAUP_8 = [&U] (1,(2,((3,24),((((((4,5),((6,7),8)),(9,10)),(((12,(13,((19,20),21))),(14,15)),((16,18),17))),(22,23)),((((11,(47,48)),((43,46),(44,45))),(27,(28,((((29,30),35),(31,(32,(33,34)))),(36,(((37,41),(39,42)),(38,40))))))),(25,26)))))); tree PAUP_9 = [&U] (1,((2,(3,((((((4,5),((6,7),8)),(9,10)),(((12,(13,((19,20),21))),(14,15)),((16,18),17))),(22,23)),((((11,(47,48)),((43,46),(44,45))),(27,(28,((((29,30),35),(31,(32,(33,34)))),(36,(((37,41),(39,42)),(38,40))))))),(25,26))))),24)); tree PAUP_10 = [&U] (1,((2,24),(3,((((((4,5),((6,7),8)),(9,10)),(((12,(13,((19,20),21))),(14,15)),((16,18),17))),(22,23)),((((11,(47,48)),((43,46),(44,45))),(27,(28,((((29,30),35),(31,(32,(33,34)))),(36,(((37,41),(39,42)),(38,40))))))),(25,26)))))); tree PAUP_11 = [&U] (1,(2,(3,((((((4,5),((6,7),8)),(9,10)),(((12,(13,((19,20),21))),(14,15)),((16,18),17))),(((((11,(47,48)),((43,46),(44,45))),(27,(28,((((29,30),35),(31,(32,(33,34)))),(36,(((37,41),(39,42)),(38,40))))))),(25,26)),(22,23))),24)))); tree PAUP_12 = [&U] (1,(2,((3,24),(((((4,5),((6,7),8)),(9,10)),(((12,(13,((19,20),21))),(14,15)),((16,18),17))),(((((11,(47,48)),((43,46),(44,45))),(27,(28,((((29,30),35),(31,(32,(33,34)))),(36,(((37,41),(39,42)),(38,40))))))),(25,26)),(22,23)))))); tree PAUP_13 = [&U] (1,(2,((3,(((((4,5),((6,7),8)),(9,10)),(((12,(13,((19,20),21))),(14,15)),((16,18),17))),(((((11,(47,48)),((43,46),(44,45))),(27,(28,((((29,30),35),(31,(32,(33,34)))),(36,(((37,41),(39,42)),(38,40))))))),(25,26)),(22,23)))),24))); tree PAUP_14 = [&U] (1,((2,(3,(((((4,5),((6,7),8)),(9,10)),(((12,(13,((19,20),21))),(14,15)),((16,18),17))),(((((11,(47,48)),((43,46),(44,45))),(27,(28,((((29,30),35),(31,(32,(33,34)))),(36,(((37,41),(39,42)),(38,40))))))),(25,26)),(22,23))))),24)); tree PAUP_15 = [&U] (1,((2,24),(3,(((((4,5),((6,7),8)),(9,10)),(((12,(13,((19,20),21))),(14,15)),((16,18),17))),(((((11,(47,48)),((43,46),(44,45))),(27,(28,((((29,30),35),(31,(32,(33,34)))),(36,(((37,41),(39,42)),(38,40))))))),(25,26)),(22,23)))))); End;