#NEXUS
[Created Thu Apr 26 07:57:02 2001 by SEQUENCE MONKEY ver. 2.9.0]
[SEQUENCE MONKEY concocted by Dan Graf, Ann Arbor, Michigan]

[ Dataset from: Graf (2002). Molecular phylogenetic analysis of two problematic ]
[               freshwater mussel genera (Unio and Gonidea) and a re-evaluation ]
[               of the classification of Nearctic Unionidae (Bivalvia:          ]
[               Palaeoheterodonta: Unionoida). Journal of Molluscan Studies 68: ]
[               65-71.                                                          ]

BEGIN DATA;
DIMENSIONS  NTAX=20  NCHAR=447;
FORMAT  DATATYPE=DNA  MISSING=?  GAP=-  INTERLEAVE;

MATRIX

[                 1........|.........|.........|.........|.........|.........|  ]

Unio              tggacccgcaata-cgtcgacccgggggattcaaccaggccgtt-gggtacgggacg-cg
Cafferia          tggacccgcaata-cgtcgacccgggggattcaaccaggccgtt-gggtacgggacg-cg
Alasmidonta       tggacccgcaata-cgtcgacccgggggattcaaccaggccgtt-gggcacgggacg-cg
Pyganodon         tggacccgcaata-cgtcgacccgggggattcaaccaggccgtt-gggcgcgggacg-cg
Lampsilis         tggacccgcaata-cgtcgacccgggggattcaaccaggccgt--gcgttcgggacg-cg
Obliquaria        tggacccgcaata-cgtcgacccgggggattcaaccaggccgt--gcgttcgggacg-cg
Elliptio          tggacccgcaata-cgtcgacccgggggattcaaccaggccgt--gcgttcgggacg-cg
Amblema           tggacccgcaata-cgtcgacccgggggattcaaccaggccgt--gcgttcgggacg-cg
Gonidea           tggacccgcaatgacgtcgacccgggggattcaaccaggccgtt-gcgatcgggacg-cg
Uniandra          tggacccgcaatg-ggtcggcccgggggattcaaccggtccgtt-acgttcgggacg-cg
Pilsbryoconcha    tggacccgcaatg-tgtcgactcgggggattcaaccgggccgtttgcgcacgggacg-cg
Pseudodon         tggacccgcaatg-tgtcgactcgggggattcaaccgggccgtt-acgcacgggacg-cg
Cumberlandia      tggaaccgcagtg---tcgactcttggaattcaacctg-ccgt--a-gcacgggacgatg
Diplodon          tggaaccgcagag---tcgacccaggggattcaacctg-ccgt-----c-cgggacg-cg
Castalia          tggaaccgcagag---tcgacccaggggattcaacctg-ccgt-----c-cgggacg-cg
Hyridella_depr    tggaaccgcagag---tcgagccgggggattcaacctg-ccgt-----c-cgggacg-cg
Velesunio         tggaaccgcagag---tcgacccgggggattcaacctg-ccgt-----g-cgggacg-cg
Neotrigonia       tggacccgcaaag---tcgacccgggggattcaacctg-ccgt--a-gtacgggacg-ag
Astarte           tggatccgcaaag---tcgacccggggaattcaacttg-ctgaacatgagcgtgtggtgg
Mytilus           tggatccgcaaag---tcggcccggggaattcaacttg-tcgttgtcgggcggcgggcgt

[                 61.......|.........|.........|.........|.........|.........|  ]

Unio              tggggg-ttatgctgagctgt-aaagccagtgccttcgc--gt--ggtctccgggcggac
Cafferia          tggtgg-ttatgctgagctgt-aaagccagtgccttcgc--gt--ggtctccgggcggac
Alasmidonta       tggggg-ttttgctgagctgt-aaagccagtgccttcgc--gt-gggtctccgggcggac
Pyganodon         tggggg-ctttgctgagctgt-aaagccagtgccttcgc--gt-gggtctccgggcggac
Lampsilis         tggggg-ttacgcggagctgt-aaagcccgtgcctttgc--gc-aggtctccgggcggac
Obliquaria        tggggg-ttttgcggagctgt-aaagcccgtgccttcgc--gc-aggtctccgggcggac
Elliptio          tggggg-ttatgcggagctgt-aaagcccgtgcctctgc--gtcaggtctccgggcggac
Amblema           tggggg-ttatgcggagctgt-aaagcccgtgcctttgc--gt-aggtctccgggcggac
Gonidea           tggggg-ttatgcggagctgt-aaagcccgtgcctttgc--gt-gggtctccgggcggac
Uniandra          cgggggactatgcggagctgt-aaagcccgtgccttcgcc-gt--ggtctccgggcggac
Pilsbryoconcha    ctgggg-ttatgcggagctgt-aaagcccgtgccttggc--gt-gggtcaccgggcggcc
Pseudodon         ctgggg-ttatgcggagccgt-aaagcccgtgccttggc--gt-gggtctccgggcggcc
Cumberlandia      ctgggataattgcggagcttccaaagcccgtttctcggc--gt-cggtctccggtcggtc
Diplodon          ctggggcg---tcggagccgc-aaggcccgcacctcggc--gtctggtctccggttggtc
Castalia          ctggggcg---tcggagtcgc-aaggcccgcacctcggc--gtccggtctctggttggt-
Hyridella_depr    ctggggcg---tcggagccgc-aaggcccgcgcctcggc--gtccggtctccggtctgtc
Velesunio         ccggagtg---gcggagctgccaaagcccgcccgtcggc--gttcggtctccgttcggtc
Neotrigonia       cgggggcaattgcggagtcgc-aaggcccgtgtcttcgttcgctt---ctccgaacggtc
Astarte           --------atcgcggatccgt-aaagaccgcactactgcg----cggctcttg-ccgg-c
Mytilus           tctgg--ttctagggatccgt-aaagacccaccaggcgtt----cggccgtcg-tcga-c

[                 121......|.........|.........|.........|.........|.........|  ]

Unio              tggtgcactttcctcgggtcgattgccacgaccggctctc-cgtgcggccaaaagcctgt
Cafferia          tggtgcactttcctcgggtcgattgccacgaccggctctc-cgtgcggccaaaagcctgt
Alasmidonta       tggtgcactttcctcgggtcgattgccacgaccggctctc-cgtgcggccaaaagcctg-
Pyganodon         tggtgcactttcctcgggtcgattgccacgaccggctctc-cgtgcggccaaaagcctg-
Lampsilis         tggtgcactttcctcgggttgattgccacgaccggctctc-cgtgcggccacaagcct-t
Obliquaria        tggtgcactttcctcgggttgattgccacgaccggctctc-cgtgcggccacaagcct-t
Elliptio          tggtgcactttcctcgggttgattgccacgaccggctctc-cgtgcggccacaagccttt
Amblema           tggtgcactttcctcgggttgatagccacgaccggctctc-cgtgcggccacaagccttt
Gonidea           tggtgcactttcctcgggttgattgccacgaccggctctc-cgtgcggccacaagcctgt
Uniandra          cggtgcactttcctcgggtcgacggccacgaccggctctc-cgtgcggccacaagcctgt
Pilsbryoconcha    tggtgcactttcctcgggtcgattgccacggccggctctc-cgtgcggccagaagcctgt
Pseudodon         tggtgcactttcctcgggtcgattgccacggccggctctc-cgtgcggccagaagcctat
Cumberlandia      tggtgcattttcttcgagtcgagagccacgaccggctctt-tg-gcggccagaagcctt-
Diplodon          tggtgcactttcctcgggtcgaacgccacgaccgattctc-tg-gcggccacaagcctg-
Castalia          tggtgcactttcctcgtgtcgaatgccacgaccgattctc-tg-gcggccacaagcctg-
Hyridella_depr    tggtgcactttcctcggatcgaacgccacgaccggctctc-tg-gcggccacaagcctg-
Velesunio         tggtgcactttcctcgggttgaacgccacgaccggctctc-tg-gcggccacaagcctg-
Neotrigonia       tggtgcactttctccgggccgagcgccacgaccggctcgc-acgacggccagaagcctg-
Astarte           gagcgcactttctccgggttgagtgccacgaccggttctg--cggcggtcagaagcc-g-
Mytilus           gagtgcactttcctcgggtagagcgccacgaccggtttcggacggcggtcacaagcc-g-

[                 181......|.........|.........|.........|.........|.........|  ]

Unio              cgctgggaaggtgaccgacgg-----cc-ca----------------gtgtc-ggcggtg
Cafferia          cgctgggaaggtgaccgacgg-----cc-ca----------------gtgtc-ggcggtg
Alasmidonta       -gctgggaaggtgaccgacgg-----cccca----------------gtgcc-ggcggtg
Pyganodon         -gctgggaaggtgaccgacgg-----cccca----------------gtgcc-ggcggtg
Lampsilis         tgctgggaaggtgaccgtcgg-----cctcc----------------gcgcc-ggcggtg
Obliquaria        tgctgggaaggtgaccgtcgg-----cctcc----------------gcgcc-ggcggtg
Elliptio          tgctgggaaggtgaccgtcgg-----cctcc----------------gcgcc-ggcggtg
Amblema           tgctgggaaggtgaccgtcgg-----cctcc----------------gcgcc-ggcggtg
Gonidea           tgctgggaaggtgaccgtggg-----cc-cc----------------gcgcc-cgcggtg
Uniandra          cgctgggaaggtgaccgtcgg-----ccccc----------------gcgcc-ggcggcg
Pilsbryoconcha    cgctggtaaggtgaccgcgggg----cc-cc----------------gcgcctcgtggtg
Pseudodon         cgctggtaaggtgaccgcggt-----cc-cc-----------------------gcggtg
Cumberlandia      -gctgggaaggtgacctccgg-----cc-tc----------------g-gc-tggcggag
Diplodon          -actgggaaggtgcctttcgg------c-tc----------------g-ccct-gaagag
Castalia          -gctgggaaggtgcctttcgg------c-tc----------------g-ccct-gaagag
Hyridella_depr    -gctgggaaggtgcctttcgg------c-ta----------------g-ccc-ggaagag
Velesunio         -gctgggaaggtgcctttcgg------c-tc----------------g-ccc-ggaagag
Neotrigonia       -gacgggaaggtgacttgccgcttccagctcccttcgcggggggcgggtggcgggaagag
Astarte           -gacgggaaggtggcc----actt---cctc---------------gtaggtg----gtt
Mytilus           -gacgggaaggtgacctg--acat---cctc---------------gtggtggccaggtg

[                 241......|.........|.........|.........|.........|.........|  ]

Unio              tt-atagcccagccagttcgttgcgctcgtcggagggccgaggaa-----gtgttgccgc
Cafferia          tt-atagcccagccagttcgttgcgctcgtcggagggccgaggaa-----gcgttgccgc
Alasmidonta       tt-atagcccagcttgttcgttgcgctcgtcggagggccgaggaa-----gtgttgccgc
Pyganodon         tt-atagcccagcttgttcgttgcgctcgtcggagggccgaggaa-----gtgttgccgc
Lampsilis         tt-atagaccagcttgttcgttgagctcgtcggagggccgaggaa-----gtgttgccgt
Obliquaria        tt-atagaccagcttgttcgttgagctcgtcggagggccgaggaa-----gtgttgccgt
Elliptio          tt-atagaccagcttgttcgttgagctcgtcggagggccgaggaa-----gtgttgccgt
Amblema           tt-atagcccagcttgttcgttgagctcgtcggagggccgaggaa-----gtgttgccgt
Gonidea           tt-atagaccagcttgctggttgagctcgtcggagggccgaggaa-----g--ttgccgt
Uniandra          tt-acagcccagccagttcgttgagctcgtcggagggccgaggaa-----gc-ttgccgc
Pilsbryoconcha    tt-atagaccagcctgtccgttgagctcgtcggagggccgaggaa-----gg-ttgccgc
Pseudodon         tt-atagaccagcaagtccgttgagctcgtcggagggccgaggaa-----gg-ttgccgc
Cumberlandia      tttatagcccagcttg--cgtt-ggctcgtcggagggccgaggaaaaaaagctttgccgc
Diplodon          tt-atagcccagcctgt-cgc-aggcacgtcggagggccgaggac------ttttgccgc
Castalia          tt-atagctcaccctgt-cgc-aggcacgtcggagggccgaggac------ttttgccgc
Hyridella_depr    tt-atagcccagcttg-ccgc-aggctcgtcggagggccgaggac------gtt-gccgc
Velesunio         tt-atagcccagcttg-ccgc-aggctcgtcggagggccgagg--------ttttgccgc
Neotrigonia       tttatagcccgaccag--cgc-cggctcgtcggcgggccgaggagggtt--ttctgccgt
Astarte           ct-atagcccgccc-g--cgt-tgactcgttgcgggaccgaggac--------ttgccgt
Mytilus           tt-atagcccgtctag--tgt-cgactcgtcccgagaccgaggat--------ttgccgc

[                 301......|.........|.........|.........|.........|.........|  ]

Unio              ctctcatc-accctccggccatccttgctcgtcacgactggggtgt-actgcttcgtcag
Cafferia          ctctcatc-accctccggccatccttgctcgtcacgactgggttgg-actgcttcgtcag
Alasmidonta       ctctcatc-accctccggccatccttgctcgtcacgactggggtgg-actgcttcgtcag
Pyganodon         ctctcatc-accctccggccatccttgctcgtcacgactggggtgg-actgcttcgtcag
Lampsilis         ttctcgtccaccctccggccatccttgctcgtcacgactggggtga-actgct-cgtcag
Obliquaria        ttctcgtccaccctccggccatccttgctcgtcacgactggggtga-actgcttcgtcag
Elliptio          ttctcagccaccctccggccatccttgctcgtcacgactggggtga-actgcttcgtcag
Amblema           ttctcagccaccctccggccatccttgctcgtcacgactggggtga-actgcttcgtcag
Gonidea           ttctca-ccaccctctggccatccttgctcgtcacgactggggtga-actgcttcgtcag
Uniandra          ttctcgtccaccctcccgccatccttgctcgtcacgaccggggcgg-actggtcggtcag
Pilsbryoconcha    gtccct-tcaccctctggccatccttgctcgtcacgactggggtga-actggtccgtcag
Pseudodon         gtccct-tcaccctctggtcatccttgctcgtcacgactggggtgg-actgtcccgtcag
Cumberlandia      gactcg-tcgctctcgggccatccgcgctcgtcacgactggggtgg-actgct-cgccag
Diplodon          gtctca-tcgcctccgggccatctgcgctcgtctcgactgggatgg-actgct-cgtcag
Castalia          gtctca-tcacctccgggctatctgcgctcgtctcgactcggatgg-actgct-cgtcag
Hyridella_depr    gtctca-tcgcctccgagccatcttcgttcgtttcgactggggtgg-actgct-cgtcag
Velesunio         gtctca-tcgtctctgggccatctgcgctcgtctcgactggggtgg-actgct-cgtcag
Neotrigonia       gtctca-tcgctttcgggccatccgttcacgtccgactcgggatgt-actgct-cg-cag
Astarte           gtcct--atcgcctcgggccgtccgcgttggtt-cgacctggttgg-actgctctg-cag
Mytilus           acctcg-actgctctcggctctctgcgtgcgtt-cgactgggaagccactgcttg--cag

[                 361......|.........|.........|.........|.........|.........|  ]

Unio              tgctctcccgaccgcgagcgtaggaagggttggt-acggtgcgagaa---gcttcgggcc
Cafferia          tgctctcccgaccgcgagcgtaggaagggttggt-acggtgcgagaa---gcttcgggcc
Alasmidonta       tgctctcccgaccgcgagcgtaggaagggttggt-acggtgcgagaa---gcttcgggcc
Pyganodon         tgctctcccgaccgcgagcgtaggaagggttggt-acggtgcgagaa---gcttcgggcc
Lampsilis         tgctctcccgaccgcgagcgtaggaagggctggt-acggtgcgagaaa--gcttcgggcc
Obliquaria        tgctctcccgaccgcgagcgtaggaagggctggt-acggtgcgagaaa--gcttcgggcc
Elliptio          tgctctcccgaccgcgagcgtaggaagggctggt-acggtgcgagaaa--gcttcgggcc
Amblema           tgctctcccgaccgcgagcgtaggaagggctggt-acggtgcgagaaa--gcttcgggcc
Gonidea           tgctctcccgaccgcgagcgtaggaagggctggt-acggtgcgagaatt-gcttcgggcc
Uniandra          tgctctcccgaccgcgagcgtaggaagggcgggt-acggtgcgagaatttgcttcgggcc
Pilsbryoconcha    tgctctcccgaccgcgagcgtaggaagggccggt-acggtgtgggactttgcttcgggcc
Pseudodon         tgctctcccgaccgcgagcgtaggaagggctggt-acggtgtgggactttgcttcgggcc
Cumberlandia      tgctctcccgaccgcgagcgt-ggaagggttcgttccggcgtgagtc---gcttcgggcc
Diplodon          tgctctcccgaccgctagtgttggaagggtttgg-caggcgcgaggc---gcttcgggcc
Castalia          tgctctcccgaccgctagtgttggaagggtttgg-caggcgcgaggc---gcttcgggcc
Hyridella_depr    tgctctcccgaccgcgagcgttggaagggttcgg-caggcgcgaggc---gcttcgggcc
Velesunio         tgctctcccgaccgcgagcgtacgaagggttcgg-cgggcgcgaggc---gcttcgggcc
Neotrigonia       tgctctcg-gactgcgtgtgc-ggaagggttcgt-ctagcgcggggc---accacgggcc
Astarte           tgcatcct-gaccgccggcgt-ggaagggctcgtacgc--gcggggc---gctacggatc
Mytilus           ttctctcc-gaccgcgtgcgt-gcgatctgtcgggaagcaacggggt---gccacgggtc

[                 421......|.........|.........|.........|.........|.........|  ]

Unio              agtggcgaatcggtcggtcctccaccc
Cafferia          agtggcgaatcggtcggtcctccaccc
Alasmidonta       agtggcgaatcggtcggtcctccaccc
Pyganodon         agtggcgaatcggtcggtcctccaccc
Lampsilis         agtggcgaatcggtcggtcctccaccc
Obliquaria        agtggcgaatcggtcggtcctccaccc
Elliptio          agtggcgaatcggtcggtcctccaccc
Amblema           agtggcgaatcggtcggtcctccaccc
Gonidea           agtggcgaatcggtcggtcctccaccc
Uniandra          ggtggcgaatcggtcggtcctccatcc
Pilsbryoconcha    agtggcgaatcggtcggtccccccacc
Pseudodon         agtggcgaatcggtcggtaccccaccc
Cumberlandia      tgtggcgaatcggtcggtcacccaccc
Diplodon          ggtggctaatcggtctgtctttctctc
Castalia          ggtggctaatcggtctgtctttctccc
Hyridella_depr    ggtggcgaatcggtcggtcttcctccc
Velesunio         ggtggcgaatcggtcggtcttccaccc
Neotrigonia       agtggcgaatcggtcggtcctccaccc
Astarte           tgtggcgaatcggtcggccctccaccc
Mytilus           agtggcgaatcggtcggtcctccaccc
;
END;

[SEQUENCE MONKEY v. 2.9.0 -- Got Monkey?]
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