#NEXUS
[Created Tue Jun 20 10:16:12 2000 by SEQUENCE MONKEY ver. 2.8.0]
[SEQUENCE MONKEY concocted by Dan Graf, Ann Arbor, Michigan]

[Dataset from: Graf & î Foighil (2000). Molecular phylogenetic analysis of 28S ]
[              rDNA supports a Gondwanan origin for Australasian Hyriidae      ]
[              (Mollusca: Bivalvia/ Unionoida). Vie Milieu 50: 245-254.        ]

BEGIN DATA;
DIMENSIONS  NTAX=14  NCHAR=446;
FORMAT  DATATYPE=DNA  MISSING=?  GAP=-  MATCHCHAR=.  INTERLEAVE;
OPTIONS GAP=MISSING;
MATRIX

[                1........|.........|.........|.........|.........|.........|  ]

H_australis_1    ttagaggcaaacgggtggaaccgcaga--gtcgacccgggggattcaacctg-ccgt---
H_australis_2    ...........................--.......................-....---
H_depressa       ...........................--.....g.................-....---
H_menziesi_1     .........................t.--.....t.................-....---
H_menziesi_2     ...........................--.......................-....---
V_ambigua_1      ...........................--.......................-....---
V_ambigua_2      ...........................--.......................-....---
Diplodon         ...........................--........a..............-....---
Hyriinae_sp      ?????????????.c............--........a..............-....---
Cumberlandia     ..........................t--......t.tt..a..........-....--a
Unio             ...................c.....atac.....................a.g....tgg
Pyganodon        ...................c.....atac.....................a.g....tgg
Amblema          ...................c.....atac.....................a.g....-gc
Lampsilis        ...................c.....atac.....................a.g....-gc

[                61.......|.........|.........|.........|.........|.........|  ]

H_australis_1    --ctgggacgc-gctggggcg---tcggagccgc-aaggcccgcgcctcggagtccggtc
H_australis_2    --.c.......-...tt....---..........-................c........
H_depressa       --.c.......-.........---..........-................c........
H_menziesi_1     --.........-.......t.---c.....a...c.........t......c........
H_menziesi_2     --.........-.......t.---c.........c.........t......c........
V_ambigua_1      --gc.......-..c..a.t.---g......t..c..a......c.g....c..t.....
V_ambigua_2      --gc.......-..c..a.t.---.......t..c..a......c.g....c..t.....
Diplodon         --.c.......-.........---..........-.........a......c...t....
Hyriinae_sp      --.c.......-.........---......t...-.........a......c........
Cumberlandia     gcac......at......ataattg......tt.c..a.....ttt.....c..-.....
Unio             gtac.......--g.....gttatg.t....t.t-..a...a.t....tc.c..--....
Pyganodon        gcgc.......--g.....gctttg.t....t.t-..a...a.t....tc.c..-g....
Amblema          gttc.......--g.....gttatg......t.t-..a.....t....tt.c..-a....
Lampsilis        gttc.......--g.....gttacg......t.t-..a.....t....tt.c.c-a....

[                121......|.........|.........|.........|.........|.........|  ]

H_australis_1    tcaggtcggtctggtgcacttttcttcggtcgaacgccacgaccggatctctg-gcggcc
H_australis_2    ..c...................c..cg...................c......-......
H_depressa       ..c....t..............c..cg.a.................c......-......
H_menziesi_1     ..c............a......c..ct...................c......-......
H_menziesi_2     ..c...................c..cg...................c......-......
V_ambigua_1      ..c.t.................c..cg...t...............c......-......
V_ambigua_2      ..c.t.................c..cg...t...............c......-......
Diplodon         ..c...t...............c..cg..................at......-......
Hyriinae_sp      ..t...t...?...........c..cgt......t..........at......-......
Cumberlandia     ..c...............t...ct.cga.....ga...........c...t..-......
Unio             ..c..g...a............c..cg......tt...........c....c.t......
Pyganodon        ..c..g...a............c..cg......tt...........c....c.t......
Amblema          ..c..g...a............c..cg...t..ta...........c....c.t......
Lampsilis        ..c..g...a............c..cg...t..tt...........c....c.t......

[                181......|.........|.........|.........|.........|.........|  ]

H_australis_1    acaagcctg--gctgggaaggtgcctttcggc--tcgc-ccggaagagtt-atagcccag
H_australis_2    .a.......--.....................--....-...........-.........
H_depressa       .........--.....................--.a..-...........-.........
H_menziesi_1     .........--.............t.......--....-...........-..-------
H_menziesi_2     .........--.....................--....-...........-.........
V_ambigua_1      .........--.....................--....-...........-.........
V_ambigua_2      .........--.....................--....-...........-.........
Diplodon         .........--a....................--....-..t........-.........
Hyriinae_sp      .........--.....................--....-..t........-.....t..c
Cumberlandia     .g......t--............a.c.c....c-...g-.t..cg.....t.........
Unio             .a.......tc............a.cga....c-ca.tgt...cg.t...-.........
Pyganodon        .a.......--............a.cga....ccca.tg....cg.t...-.........
Amblema          ........ttt............a.cg.....ctc...g....cg.t...-.........
Lampsilis        ........tt-............a.cg.....ctc...g....cg.t...-....a....

[                241......|.........|.........|.........|.........|.........|  ]

H_australis_1    cttgt-cgcag-gctcttcggagggccgagga-------cttt-gccgcgtctcatc-gc
H_australis_2    .....-.....-....g...............-------.g..-.............-..
H_depressa       ....c-.....-....g...............-------.g..-.............-..
H_menziesi_1     ------------------------------------------------------------
H_menziesi_2     ....c-t....-....g...............-------.ga.-.............-..
V_ambigua_1      ....c-.....-....g..............---------...t.............-.t
V_ambigua_2      ....c-.....-....g..............---------...t.............-..
Diplodon         .c...-.....-..a.g...............-------....t.............-..
Hyriinae_sp      .c...-.....-..a.g...............-------....t.............-a.
Cumberlandia     ....--..tt.-....g...............aaaaaag....-......a...g..-..
Unio             .ca..t..tt.c....g...............-----agtg..-.....c.......-a.
Pyganodon        .....t..tt.c....g...............-----agtg..-.....c.......-a.
Amblema          .....t..tt.a....g...............-----agtg..-....tt.....g.ca.
Lampsilis        .....t..tt.a....g...............-----agtg..-....tt....g..ca.

[                301......|.........|.........|.........|.........|.........|  ]

H_australis_1    ctccgggccatctgcgttcgtttcgactggggtggactgct-cgtcagtgctctcccgac
H_australis_2    .........................................-..................
H_depressa       .....a.......t...........................-..................
H_menziesi_1     -------------------------------------------------........a..
H_menziesi_2     ............c.g.c.....-..................-..................
V_ambigua_1      ...t............c....c...................-..................
V_ambigua_2      ...t............c....c...................-..................
Diplodon         ................c....c.........a.........-..................
Hyriinae_sp      ........t.......c....c......c..a.........-..................
Cumberlandia     tct.........c...c....ca..................-..c...............
Unio             .ct.c.......ctt.c....ca...........t......t..................
Pyganodon        .ct.c.......ctt.c....ca..................t..................
Amblema          .ct.c.......ctt.c....ca...........a......t..................
Lampsilis        .ct.c.......ctt.c....ca...........a......-..................

[                361......|.........|.........|.........|.........|.........|  ]

H_australis_1    cgcgagctttggaagggttcgt-caggcgcgaggc-gcttcgggccggtatcaaatcggt
H_australis_2    .......g.............g-.g..........-.............gg.g.......
H_depressa       .......g.............g-............-.............gg.g.......
H_menziesi_1     .......g.............a-...........t-.............gg.g.......
H_menziesi_2     .......g.............g-............-.............gg.g.......
V_ambigua_1      .......g.ac..........g-.g..........-.............gg.g.......
V_ambigua_2      .......g.ac..........g-.g...t......-.............gg.g.......
Diplodon         ...t..tg...........t.g-............-.............gg.t.......
Hyriinae_sp      ...t..tg...........t.g-............-.............gg.t.......
Cumberlandia     .......g.-............t.c....t...t.-..........t..gg.g.......
Unio             .......g.a.........g..-ac..t.....aa-..........a..gg.g.......
Pyganodon        .......g.a.........g..-ac..t.....aa-..........a..gg.g.......
Amblema          .......g.a.......c.g..-ac..t.....aaa..........a..gg.g.......
Lampsilis        .......g.a.......c.g..-ac..t.....aaa..........a..gg.g.......

[                421......|.........|......  ]

H_australis_1    cggtcttcctcccgacccgtcttgaa
H_australis_2    ..........................
H_depressa       ..........................
H_menziesi_1     .............-...a.......?
H_menziesi_2     ..........................
V_ambigua_1      .........a................
V_ambigua_2      .........a................
Diplodon         .t.....t...t..............
Hyriinae_sp      .t.....t.....?????????????
Cumberlandia     .....ac..a................
Unio             .....c...a................
Pyganodon        .....c...a................
Amblema          .....c...a................
Lampsilis        .....c...a................
;
END;

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